My idea is that you can diminish contamination from boron compounds to critical parts like electrodes, coils, observation windows and vacuum pump by creating a refrigerated “cold trap” inside your vacuum chamber. Also the outlet toward the vacuum pump can be cooled to trap the boron before it enters the pump.
Essentially, the coldest surface around will draw most of the excess borane toward itself, keeping everything else much cleaner. And if that cold trap is a smooth surface, it can be cleaned much easier than all those complex components.
You can add some coolant piping around part of the vacuum vessel, using part of the vessel wall as a cold trap. Or place a dedicated cold trap heat exchanger inside the vessel.
Essentially, it needs to be nothing more than a copper plate with some thin copper piping soldered to it, through which the coolant flows.